I have only just bought this car, i'll be going for a nice long drive down the coast this sunday, i will get back to you if i notice anything like what you're mentioning.
so far i've only done city driving really and not noticed anything yet.
my first thought was the cat, but you said they replaced that and it made a slight difference, now i've no idea what the problem could be.
i'm located in Canberra, and purchased my car from the Lexus dealership here.
as i said, if i dont notice any odd sounds on this trip of mine i'll get back to you and we can discuss it further from there.
oh also, mine is a 2003 auto. not sure if this will make a difference if yours is manual or a different year but i thought i'd mention it.
i will call the dealership here and see if anyone knows anything about IS200's having a characteristic resonance.
best wishes
Atto